HL_5FDV_155

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

5FDV|1|2A|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDV_155 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0817

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDV|1|2A|C|2248
5FDV|1|2A|U|2249
5FDV|1|2A|G|2250
5FDV|1|2A|OMG|2251
5FDV|1|2A|G|2252
5FDV|1|2A|G|2253
5FDV|1|2A|C|2254
5FDV|1|2A|G|2255
5FDV|1|2A|G|2256

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16