HL_5FDV_180
3D structure
- PDB id
- 5FDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UGAGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5FDV_180 not in the Motif Atlas
- Homologous match to HL_4LFB_007
- Geometric discrepancy: 0.0833
- The information below is about HL_4LFB_007
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.7
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 349
Unit IDs
5FDV|1|2a|U|296
5FDV|1|2a|G|297
5FDV|1|2a|A|298
5FDV|1|2a|G|299
5FDV|1|2a|A|300
5FDV|1|2a|G|301
Current chains
- Chain 2a
- 16S ribosomal RNA
Nearby chains
- Chain 2d
- 30S ribosomal protein S4
- Chain 2e
- 30S ribosomal protein S5
- Chain 2q
- 30S ribosomal protein S17
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