HL_5FDV_182

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5FDV|1|2a|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDV_182 not in the Motif Atlas

Homologous match to HL_5J7L_009

Geometric discrepancy: 0.1821

The information below is about HL_5J7L_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5FDV|1|2a|C|342
5FDV|1|2a|U|343
5FDV|1|2a|A|344
5FDV|1|2a|C|345
5FDV|1|2a|G|346
5FDV|1|2a|G|347

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2O

50S ribosomal protein L14

Chain 2T

50S ribosomal protein L19