HL_5FJ1_003

3D structure

PDB id

5FJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the standard kink turn HmKt-7 as stem loop in P212121 space group

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FJ1_003 not in the Motif Atlas

Geometric match to HL_6N2V_002

Geometric discrepancy: 0.0616

The information below is about HL_6N2V_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

5FJ1|1|C|C|9
5FJ1|1|C|G|10
5FJ1|1|C|A|11
5FJ1|1|C|A|12
5FJ1|1|C|A|13
5FJ1|1|C|G|14

Current chains

Chain C

HMKT-7

Nearby chains

Chain B

HMKT-7