3D structure

PDB id
5FJ4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the standard kink turn HmKt-7 as stem loop bound with U1A and L7Ae proteins
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
CAUUGCACUCCG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_98984.5
Basepair signature
cWW-F
Number of instances in this motif group
31

Unit IDs

5FJ4|1|H|C|11
5FJ4|1|H|A|12
5FJ4|1|H|U|13
5FJ4|1|H|U|14
5FJ4|1|H|G|15
5FJ4|1|H|C|16
5FJ4|1|H|A|17
5FJ4|1|H|C|18
5FJ4|1|H|U|19
5FJ4|1|H|C|20
5FJ4|1|H|C|21
5FJ4|1|H|G|22

Current chains

Chain H
HMKT-7

Nearby chains

Chain E
U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A

Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.0362 s