HL_5FL8_014

3D structure

PDB id

5FL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

5FL8|1|x|U|879, 5FL8|1|x|G|880, 5FL8|1|x|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FL8_014 not in the Motif Atlas

Geometric match to HL_6DTD_001

Geometric discrepancy: 0.3585

The information below is about HL_6DTD_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

5FL8|1|x|A|876
5FL8|1|x|C|877
5FL8|1|x|G|878
5FL8|1|x|U|879
5FL8|1|x|G|880
5FL8|1|x|C|881
5FL8|1|x|A|882
5FL8|1|x|A|883
5FL8|1|x|A|884
5FL8|1|x|U|885

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A

Chain j

60S ribosomal protein L37-A