HL_5FL8_015

3D structure

PDB id

5FL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

5FL8|1|x|A|913, 5FL8|1|x|A|914, 5FL8|1|x|A|915, 5FL8|1|x|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FL8_015 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3262

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5FL8|1|x|G|910
5FL8|1|x|C|911
5FL8|1|x|G|912
5FL8|1|x|A|913
5FL8|1|x|A|914
5FL8|1|x|A|915
5FL8|1|x|G|916
5FL8|1|x|A|917
5FL8|1|x|C|918

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A