HL_5FL8_021

3D structure

PDB id

5FL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGGUGGCCAUGGAAGUCGGAAUCCG

Length

25 nucleotides

Bulged bases

5FL8|1|x|G|1236, 5FL8|1|x|U|1241, 5FL8|1|x|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FL8|1|x|C|1232
5FL8|1|x|G|1233
5FL8|1|x|G|1234
5FL8|1|x|U|1235
5FL8|1|x|G|1236
5FL8|1|x|G|1237
5FL8|1|x|C|1238
5FL8|1|x|C|1239
5FL8|1|x|A|1240
5FL8|1|x|U|1241
5FL8|1|x|G|1242
5FL8|1|x|G|1243
5FL8|1|x|A|1244
5FL8|1|x|A|1245
5FL8|1|x|G|1246
5FL8|1|x|U|1247
5FL8|1|x|C|1248
5FL8|1|x|G|1249
5FL8|1|x|G|1250
5FL8|1|x|A|1251
5FL8|1|x|A|1252
5FL8|1|x|U|1253
5FL8|1|x|C|1254
5FL8|1|x|C|1255
5FL8|1|x|G|1256

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L12-A

Chain n

Ribosome assembly factor MRT4

Chain o

Nucleolar GTP-binding protein 1

Chain q

Ribosome assembly protein 4