HL_5FL8_026

3D structure

PDB id

5FL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GUCAACAGCAGUUGGAC

Length

17 nucleotides

Bulged bases

5FL8|1|x|G|1507, 5FL8|1|x|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FL8|1|x|G|1500
5FL8|1|x|U|1501
5FL8|1|x|C|1502
5FL8|1|x|A|1503
5FL8|1|x|A|1504
5FL8|1|x|C|1505
5FL8|1|x|A|1506
5FL8|1|x|G|1507
5FL8|1|x|C|1508
5FL8|1|x|A|1509
5FL8|1|x|G|1510
5FL8|1|x|U|1511
5FL8|1|x|U|1512
5FL8|1|x|G|1513
5FL8|1|x|G|1514
5FL8|1|x|A|1515
5FL8|1|x|C|1516

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain P

60S ribosomal protein L17-A

Chain R

60S ribosomal protein L19-A

Chain l

60S ribosomal protein L39