HL_5FL8_028

3D structure

PDB id

5FL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UGAUUUUAUGCAG

Length

13 nucleotides

Bulged bases

5FL8|1|x|U|1568, 5FL8|1|x|U|1569, 5FL8|1|x|A|1571

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FL8|1|x|U|1564
5FL8|1|x|G|1565
5FL8|1|x|A|1566
5FL8|1|x|U|1567
5FL8|1|x|U|1568
5FL8|1|x|U|1569
5FL8|1|x|U|1570
5FL8|1|x|A|1571
5FL8|1|x|U|1572
5FL8|1|x|G|1573
5FL8|1|x|C|1574
5FL8|1|x|A|1575
5FL8|1|x|G|1576

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain X

60S ribosomal protein L25

Chain y

5.8S ribosomal RNA; 5.8S rRNA