HL_5FL8_036

3D structure

PDB id

5FL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GUCUAAUUAAAAC

Length

13 nucleotides

Bulged bases

5FL8|1|x|A|2138, 5FL8|1|x|A|2139, 5FL8|1|x|U|2140, 5FL8|1|x|A|2142, 5FL8|1|x|A|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FL8|1|x|G|2134
5FL8|1|x|U|2135
5FL8|1|x|C|2136
5FL8|1|x|U|2137
5FL8|1|x|A|2138
5FL8|1|x|A|2139
5FL8|1|x|U|2140
5FL8|1|x|U|2141
5FL8|1|x|A|2142
5FL8|1|x|A|2143
5FL8|1|x|A|2144
5FL8|1|x|A|2145
5FL8|1|x|C|2146

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain j

60S ribosomal protein L37-A