HL_5FL8_047
3D structure
- PDB id
- 5FL8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CACAUUG
- Length
- 7 nucleotides
- Bulged bases
- 5FL8|1|y|U|113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5FL8_047 not in the Motif Atlas
- Homologous match to HL_8CRE_076
- Geometric discrepancy: 0.506
- The information below is about HL_8CRE_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53890.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
5FL8|1|y|C|108
5FL8|1|y|A|109
5FL8|1|y|C|110
5FL8|1|y|A|111
5FL8|1|y|U|112
5FL8|1|y|U|113
5FL8|1|y|G|114
Current chains
- Chain y
- 5.8S ribosomal RNA
Nearby chains
- Chain X
- 60S ribosomal protein L25
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
- Chain x
- Large subunit ribosomal RNA; LSU rRNA
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