HL_5FL8_055

3D structure

PDB id

5FL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CCAUUUUUGGUAAGCAGAACUGG

Length

23 nucleotides

Bulged bases

5FL8|1|x|U|1128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FL8|1|x|C|1118
5FL8|1|x|C|1119
5FL8|1|x|A|1120
5FL8|1|x|U|1121
5FL8|1|x|U|1122
5FL8|1|x|U|1123
5FL8|1|x|U|1124
5FL8|1|x|U|1125
5FL8|1|x|G|1126
5FL8|1|x|G|1127
5FL8|1|x|U|1128
5FL8|1|x|A|1129
5FL8|1|x|A|1130
5FL8|1|x|G|1131
5FL8|1|x|C|1132
5FL8|1|x|A|1133
5FL8|1|x|G|1134
5FL8|1|x|A|1135
5FL8|1|x|A|1136
5FL8|1|x|C|1137
5FL8|1|x|U|1138
5FL8|1|x|G|1139
5FL8|1|x|G|1140

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L7-A

Chain o

Nucleolar GTP-binding protein 1

Chain z

5S ribosomal RNA; 5S rRNA