HL_5GAD_012

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

5GAD|1|A|G|329, 5GAD|1|A|A|330, 5GAD|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAD_012 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.1165

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

5GAD|1|A|G|327
5GAD|1|A|U|328
5GAD|1|A|G|329
5GAD|1|A|A|330
5GAD|1|A|C|331
5GAD|1|A|A|332
5GAD|1|A|G|333
5GAD|1|A|C|334
5GAD|1|A|C|335

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24