HL_5GAD_027

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5GAD|1|A|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAD_027 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.1479

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5GAD|1|A|C|1064
5GAD|1|A|U|1065
5GAD|1|A|U|1066
5GAD|1|A|A|1067
5GAD|1|A|G|1068
5GAD|1|A|A|1069
5GAD|1|A|A|1070
5GAD|1|A|G|1071
5GAD|1|A|C|1072
5GAD|1|A|A|1073
5GAD|1|A|G|1074

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L11