HL_5GAD_052

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5GAD|1|A|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAD_052 not in the Motif Atlas

Geometric match to HL_7A0S_052

Geometric discrepancy: 0.1005

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5GAD|1|A|C|2248
5GAD|1|A|U|2249
5GAD|1|A|G|2250
5GAD|1|A|G|2251
5GAD|1|A|G|2252
5GAD|1|A|G|2253
5GAD|1|A|C|2254
5GAD|1|A|G|2255
5GAD|1|A|G|2256

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

tRNA CCAend

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27