HL_5GAD_061

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAD_061 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.1602

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5GAD|1|A|C|2551
5GAD|1|A|U|2552
5GAD|1|A|G|2553
5GAD|1|A|U|2554
5GAD|1|A|U|2555
5GAD|1|A|C|2556
5GAD|1|A|G|2557

Current chains

Chain A

23S rRNA

Nearby chains