HL_5GAF_003
3D structure
- PDB id
- 5GAF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNC in complex with SRP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- UGAUAUGAA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5GAF_003 not in the Motif Atlas
- Homologous match to HL_5J7L_135
- Geometric discrepancy: 0.1281
- The information below is about HL_5J7L_135
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_80241.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5GAF|1|A|U|87
5GAF|1|A|G|88
5GAF|1|A|A|89
5GAF|1|A|U|90
5GAF|1|A|A|91
5GAF|1|A|U|92
5GAF|1|A|G|93
5GAF|1|A|A|94
5GAF|1|A|A|95
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain U
- 50S ribosomal protein L23
- Chain V
- 50S ribosomal protein L24
- Chain Z
- 50S ribosomal protein L29
- Chain i
- Signal recognition particle protein
Coloring options: