HL_5GAF_007
3D structure
- PDB id
- 5GAF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNC in complex with SRP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GAAACAUC
- Length
- 8 nucleotides
- Bulged bases
- 5GAF|1|A|A|196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5GAF_007 not in the Motif Atlas
- Homologous match to HL_5J7L_139
- Geometric discrepancy: 0.1085
- The information below is about HL_5J7L_139
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_30068.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
5GAF|1|A|G|194
5GAF|1|A|A|195
5GAF|1|A|A|196
5GAF|1|A|A|197
5GAF|1|A|C|198
5GAF|1|A|A|199
5GAF|1|A|U|200
5GAF|1|A|C|201
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L15
- Chain Y
- 50S ribosomal protein L28
Coloring options: