HL_5GAF_010

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

5GAF|1|A|A|311

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAF_010 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1006

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

5GAF|1|A|C|305
5GAF|1|A|U|306
5GAF|1|A|G|307
5GAF|1|A|G|308
5GAF|1|A|A|309
5GAF|1|A|A|310
5GAF|1|A|A|311
5GAF|1|A|G|312

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L24