HL_5GAF_012

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

5GAF|1|A|G|329, 5GAF|1|A|A|330, 5GAF|1|A|C|331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAF_012 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.1166

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

5GAF|1|A|G|327
5GAF|1|A|U|328
5GAF|1|A|G|329
5GAF|1|A|A|330
5GAF|1|A|C|331
5GAF|1|A|A|332
5GAF|1|A|G|333
5GAF|1|A|C|334
5GAF|1|A|C|335

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24