HL_5GAF_020

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

5GAF|1|A|U|646

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAF_020 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.3337

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5GAF|1|A|U|641
5GAF|1|A|U|642
5GAF|1|A|A|643
5GAF|1|A|A|644
5GAF|1|A|C|645
5GAF|1|A|U|646
5GAF|1|A|G|647

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L33

Chain e

50S ribosomal protein L35