HL_5GAF_027

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5GAF|1|A|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAF_027 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.1479

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5GAF|1|A|C|1064
5GAF|1|A|U|1065
5GAF|1|A|U|1066
5GAF|1|A|A|1067
5GAF|1|A|G|1068
5GAF|1|A|A|1069
5GAF|1|A|A|1070
5GAF|1|A|G|1071
5GAF|1|A|C|1072
5GAF|1|A|A|1073
5GAF|1|A|G|1074

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L11