3D structure

PDB id
5GAF (explore in PDB, NAKB, or RNA 3D Hub)
Description
RNC in complex with SRP
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
GUUAAUC
Length
7 nucleotides
Bulged bases
5GAF|1|A|U|1325, 5GAF|1|A|U|1329
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5GAF_032 not in the Motif Atlas
Homologous match to HL_5J7L_166
Geometric discrepancy: 0.0945
The information below is about HL_5J7L_166
Detailed Annotation
Pseudoknot geometry with 3' bulge
Broad Annotation
No text annotation
Motif group
HL_57176.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
14

Unit IDs

5GAF|1|A|G|1324
5GAF|1|A|U|1325
5GAF|1|A|U|1326
5GAF|1|A|A|1327
5GAF|1|A|A|1328
5GAF|1|A|U|1329
5GAF|1|A|C|1330

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain O
50S ribosomal protein L17
Chain T
50S ribosomal protein L22
Chain i
Signal recognition particle protein

Coloring options:


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