HL_5GAF_059

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

5GAF|1|A|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAF_059 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1419

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5GAF|1|A|A|2471
5GAF|1|A|G|2472
5GAF|1|A|U|2473
5GAF|1|A|U|2474
5GAF|1|A|C|2475
5GAF|1|A|A|2476
5GAF|1|A|U|2477
5GAF|1|A|A|2478
5GAF|1|A|U|2479

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain f

50S ribosomal protein L36