HL_5GAG_007

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5GAG|1|A|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAG_007 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.0933

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5GAG|1|A|G|194
5GAG|1|A|A|195
5GAG|1|A|A|196
5GAG|1|A|A|197
5GAG|1|A|C|198
5GAG|1|A|A|199
5GAG|1|A|U|200
5GAG|1|A|C|201

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain Y

50S ribosomal protein L28