3D structure

PDB id
5GAG (explore in PDB, NAKB, or RNA 3D Hub)
Description
RNC in complex with SRP-SR in the closed state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UUUUGUAUAA
Length
10 nucleotides
Bulged bases
5GAG|1|A|A|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5GAG_017 not in the Motif Atlas
Homologous match to HL_5J7L_150
Geometric discrepancy: 0.094
The information below is about HL_5J7L_150
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

5GAG|1|A|U|566
5GAG|1|A|U|567
5GAG|1|A|U|568
5GAG|1|A|U|569
5GAG|1|A|G|570
5GAG|1|A|U|571
5GAG|1|A|A|572
5GAG|1|A|U|573
5GAG|1|A|A|574
5GAG|1|A|A|575

Current chains

Chain A
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain M
50S ribosomal protein L15
Chain R
50S ribosomal protein L20
Chain S
50S ribosomal protein L21
Chain b
50S ribosomal protein L32

Coloring options:


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