HL_5GAG_018

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

5GAG|1|A|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAG_018 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3138

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5GAG|1|A|C|611
5GAG|1|A|G|612
5GAG|1|A|A|613
5GAG|1|A|A|614
5GAG|1|A|U|615
5GAG|1|A|A|616
5GAG|1|A|G|617

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4