HL_5GAG_021

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAG_021 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.2018

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5GAG|1|A|G|712
5GAG|1|A|G|713
5GAG|1|A|U|714
5GAG|1|A|A|715
5GAG|1|A|A|716
5GAG|1|A|C|717
5GAG|1|A|A|718
5GAG|1|A|C|719

Current chains

Chain A

23S rRNA

Nearby chains