HL_5GAG_022
3D structure
- PDB id
- 5GAG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNC in complex with SRP-SR in the closed state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGUUGAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 5GAG|1|A|U|747, 5GAG|1|A|A|751, 5GAG|1|A|A|752
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5GAG_022 not in the Motif Atlas
- Homologous match to HL_7A0S_022
- Geometric discrepancy: 0.0909
- The information below is about HL_7A0S_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
5GAG|1|A|U|744
5GAG|1|A|G|745
5GAG|1|A|U|746
5GAG|1|A|U|747
5GAG|1|A|G|748
5GAG|1|A|A|749
5GAG|1|A|A|750
5GAG|1|A|A|751
5GAG|1|A|A|752
5GAG|1|A|A|753
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain T
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
- Chain d
- 50S ribosomal protein L34
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