HL_5GAG_032

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

5GAG|1|A|U|1325, 5GAG|1|A|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAG_032 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.1393

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

5GAG|1|A|G|1324
5GAG|1|A|U|1325
5GAG|1|A|U|1326
5GAG|1|A|A|1327
5GAG|1|A|A|1328
5GAG|1|A|U|1329
5GAG|1|A|C|1330

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain T

50S ribosomal protein L22

Chain i

Signal recognition particle protein Ffh