HL_5GAG_034

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5GAG|1|A|U|1396, 5GAG|1|A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAG_034 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1317

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5GAG|1|A|G|1389
5GAG|1|A|U|1390
5GAG|1|A|U|1391
5GAG|1|A|A|1392
5GAG|1|A|A|1393
5GAG|1|A|U|1394
5GAG|1|A|A|1395
5GAG|1|A|U|1396
5GAG|1|A|U|1397
5GAG|1|A|C|1398

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23

Chain i

Signal recognition particle protein Ffh