HL_5GAG_048

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5GAG|1|A|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAG_048 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.0832

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

5GAG|1|A|G|1949
5GAG|1|A|G|1950
5GAG|1|A|U|1951
5GAG|1|A|A|1952
5GAG|1|A|A|1953
5GAG|1|A|G|1954
5GAG|1|A|U|1955
5GAG|1|A|U|1956
5GAG|1|A|C|1957

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L14