HL_5GAG_052

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5GAG|1|A|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAG_052 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.1049

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

5GAG|1|A|C|2248
5GAG|1|A|U|2249
5GAG|1|A|G|2250
5GAG|1|A|G|2251
5GAG|1|A|G|2252
5GAG|1|A|G|2253
5GAG|1|A|C|2254
5GAG|1|A|G|2255
5GAG|1|A|G|2256

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

tRNA CCAend

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27