HL_5GAG_071

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

5GAG|1|A|U|139

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAG_071 not in the Motif Atlas

Geometric match to HL_9H3G_006

Geometric discrepancy: 0.392

The information below is about HL_9H3G_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91813.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

24

Unit IDs

5GAG|1|A|U|137
5GAG|1|A|U|138
5GAG|1|A|U|139
5GAG|1|A|C|140
5GAG|1|A|G|141
5GAG|1|A|A|142

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23