3D structure

PDB id
5GAH (explore in PDB, NAKB, or RNA 3D Hub)
Description
RNC in complex with SRP with detached NG domain
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GUGACAGCC
Length
9 nucleotides
Bulged bases
5GAH|1|A|G|329, 5GAH|1|A|A|330, 5GAH|1|A|C|331
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5GAH_012 not in the Motif Atlas
Homologous match to HL_4WF9_012
Geometric discrepancy: 0.1165
The information below is about HL_4WF9_012
Detailed Annotation
T-loop with unstacked turn
Broad Annotation
T-loop
Motif group
HL_27670.3
Basepair signature
cWW-tWH-F-F
Number of instances in this motif group
15

Unit IDs

5GAH|1|A|G|327
5GAH|1|A|U|328
5GAH|1|A|G|329
5GAH|1|A|A|330
5GAH|1|A|C|331
5GAH|1|A|A|332
5GAH|1|A|G|333
5GAH|1|A|C|334
5GAH|1|A|C|335

Current chains

Chain A
23S rRNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain V
50S ribosomal protein L24

Coloring options:


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