HL_5GAH_043

3D structure

PDB id

5GAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP with detached NG domain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAH_043 not in the Motif Atlas

Homologous match to HL_5J7L_177

Geometric discrepancy: 0.1009

The information below is about HL_5J7L_177

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80709.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

5GAH|1|A|C|1752
5GAH|1|A|G|1753
5GAH|1|A|A|1754
5GAH|1|A|A|1755
5GAH|1|A|G|1756

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L19