HL_5GAO_001

3D structure

PDB id

5GAO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Head region of the yeast spliceosomal U4/U6.U5 tri-snRNP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UCAAUCAAGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAO|1|V|U|100
5GAO|1|V|C|101
5GAO|1|V|A|102
5GAO|1|V|A|103
5GAO|1|V|U|104
5GAO|1|V|C|128
5GAO|1|V|A|129
5GAO|1|V|A|130
5GAO|1|V|G|131
5GAO|1|V|A|132

Current chains

Chain V

Saccharomyces cerevisiae strain UOA_M2 chromosome 5 sequence

Nearby chains

Chain B

Pre-mRNA-splicing helicase BRR2

Chain n

Small nuclear ribonucleoprotein Sm D3