HL_5GMK_002
3D structure
- PDB id
- 5GMK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUGCCUUUUACCA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5GMK|1|D|U|91
5GMK|1|D|U|92
5GMK|1|D|G|93
5GMK|1|D|C|94
5GMK|1|D|C|95
5GMK|1|D|U|96
5GMK|1|D|U|97
5GMK|1|D|U|98
5GMK|1|D|U|99
5GMK|1|D|A|100
5GMK|1|D|C|101
5GMK|1|D|C|102
5GMK|1|D|A|103
Current chains
- Chain D
- U5 snRNA
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain B
- 5'-Exon
- Chain E
- U6 spliceosomal RNA; U6 snRNA
- Chain J
- Pre-mRNA-splicing factor CWC21
- Chain M
- Intron_BPS
- Chain N
- 5'-Splicing Site
- Chain O
- Pre-mRNA-splicing factor PRP46
- Chain S
- Pre-mRNA-splicing factor CWC15
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