HL_5GMK_006

3D structure

PDB id

5GMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCCUCGCACUUGUGG

Length

15 nucleotides

Bulged bases

5GMK|1|L|C|1107, 5GMK|1|L|U|1110

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GMK|1|L|C|1101
5GMK|1|L|C|1102
5GMK|1|L|C|1103
5GMK|1|L|U|1104
5GMK|1|L|C|1105
5GMK|1|L|G|1106
5GMK|1|L|C|1107
5GMK|1|L|A|1108
5GMK|1|L|C|1109
5GMK|1|L|U|1110
5GMK|1|L|U|1111
5GMK|1|L|G|1112
5GMK|1|L|U|1113
5GMK|1|L|G|1114
5GMK|1|L|G|1115

Current chains

Chain L

U2 snRNA

Nearby chains

Chain a

U2 small nuclear ribonucleoprotein B''

Chain y

Small nuclear ribonucleoprotein Sm D3