HL_5H4P_005
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- UUGGAACA
- Length
- 8 nucleotides
- Bulged bases
- 5H4P|1|1|C|200
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5H4P_005 not in the Motif Atlas
- Homologous match to HL_5TBW_005
- Geometric discrepancy: 0.1497
- The information below is about HL_5TBW_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_58705.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
5H4P|1|1|U|194
5H4P|1|1|U|195
5H4P|1|1|G|196
5H4P|1|1|G|197
5H4P|1|1|A|198
5H4P|1|1|A|199
5H4P|1|1|C|200
5H4P|1|1|A|201
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain Y
- 60S ribosomal protein L26-A
- Chain e
- 60S ribosomal protein L32
Coloring options: