HL_5H4P_011

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5H4P_011 not in the Motif Atlas

Homologous match to HL_8C3A_011

Geometric discrepancy: 0.2167

The information below is about HL_8C3A_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5H4P|1|1|U|382
5H4P|1|1|G|383
5H4P|1|1|A|384
5H4P|1|1|A|385
5H4P|1|1|A|386
5H4P|1|1|A|387

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain P

60S ribosomal protein L17-A

Chain z

Cytoplasmic 60S subunit biogenesis factor REH1