HL_5H4P_031

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

5H4P|1|1|G|1507, 5H4P|1|1|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5H4P_031 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1296

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

5H4P|1|1|A|1506
5H4P|1|1|G|1507
5H4P|1|1|C|1508
5H4P|1|1|A|1509
5H4P|1|1|G|1510
5H4P|1|1|U|1511
5H4P|1|1|U|1512

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain P

60S ribosomal protein L17-A

Chain R

60S ribosomal protein L19-A

Chain l

60S ribosomal protein L39