HL_5H4P_032
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GGGAAGCUCC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5H4P_032 not in the Motif Atlas
- Geometric match to HL_8KAL_008
- Geometric discrepancy: 0.3599
- The information below is about HL_8KAL_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
5H4P|1|1|G|1542
5H4P|1|1|G|1543
5H4P|1|1|G|1544
5H4P|1|1|A|1545
5H4P|1|1|A|1546
5H4P|1|1|G|1547
5H4P|1|1|C|1548
5H4P|1|1|U|1549
5H4P|1|1|C|1550
5H4P|1|1|C|1551
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L8-A
- Chain N
- 60S ribosomal protein L15-A
- Chain j
- 60S ribosomal protein L37-A
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