HL_5H4P_090

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

AGCCUUGUUGUU

Length

12 nucleotides

Bulged bases

5H4P|1|1|U|3351, 5H4P|1|1|U|3352, 5H4P|1|1|U|3354, 5H4P|1|1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5H4P|1|1|A|3347
5H4P|1|1|G|3348
5H4P|1|1|C|3349
5H4P|1|1|C|3350
5H4P|1|1|U|3351
5H4P|1|1|U|3352
5H4P|1|1|G|3353
5H4P|1|1|U|3354
5H4P|1|1|U|3355
5H4P|1|1|G|3356
5H4P|1|1|U|3357
5H4P|1|1|U|3358

Current chains

Chain 1

25S ribosomal RNA

Nearby chains