HL_5H5U_001
3D structure
- PDB id
- 5H5U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanistic insights into the alternative translation termination by ArfA and RF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- CAGCUGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 5H5U|1|5|C|16, 5H5U|1|5|U|17|||A, 5H5U|1|5|G|18, 5H5U|1|5|G|19, 5H5U|1|5|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5H5U_001 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1225
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
5H5U|1|5|C|13
5H5U|1|5|A|14
5H5U|1|5|G|15
5H5U|1|5|C|16
5H5U|1|5|U|17|||A
5H5U|1|5|G|18
5H5U|1|5|G|19
5H5U|1|5|U|20
5H5U|1|5|A|21
5H5U|1|5|G|22
Current chains
- Chain 5
- P-site tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5
Coloring options: