HL_5H5U_016

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5H5U|1|A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5H5U_016 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0756

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5H5U|1|A|G|410
5H5U|1|A|G|411
5H5U|1|A|A|412
5H5U|1|A|C|413
5H5U|1|A|C|414
5H5U|1|A|A|415
5H5U|1|A|U|416
5H5U|1|A|C|417

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15