HL_5H5U_024

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5H5U_024 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.0924

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5H5U|1|A|G|712
5H5U|1|A|G|713
5H5U|1|A|U|714
5H5U|1|A|A|715
5H5U|1|A|A|716
5H5U|1|A|C|717
5H5U|1|A|A|718
5H5U|1|A|C|719

Current chains

Chain A

23S rRNA

Nearby chains

Chain h

Small subunit ribosomal RNA; SSU rRNA

Chain v

30S ribosomal protein S15