HL_5H5U_030

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5H5U_030 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.0797

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5H5U|1|A|G|978
5H5U|1|A|A|979
5H5U|1|A|A|980
5H5U|1|A|A|981
5H5U|1|A|C|982
5H5U|1|A|A|983
5H5U|1|A|A|984
5H5U|1|A|C|985

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L20

Chain S

50S ribosomal protein L21

Chain a

50S ribosomal protein L30