HL_5H5U_043

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5H5U|1|A|A|1614, 5H5U|1|A|A|1616, 5H5U|1|A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5H5U_043 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0605

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5H5U|1|A|C|1612
5H5U|1|A|G|1613
5H5U|1|A|A|1614
5H5U|1|A|C|1615
5H5U|1|A|A|1616
5H5U|1|A|C|1617
5H5U|1|A|A|1618
5H5U|1|A|G|1619

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L22

Chain d

50S ribosomal protein L34